Beamer
Version 5 (Andrey Golovin, 03.10.2013 00:40)
1 | 1 | Andrey Golovin | h1. Приёмы создания илюстраций в LATEX |
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2 | 1 | Andrey Golovin | |
3 | 1 | Andrey Golovin | |
4 | 1 | Andrey Golovin | > > Файлы и листинги которые я размещаю не идеальны, это рабочие файлы, которые делались часто на скорость. |
5 | 1 | Andrey Golovin | |
6 | 1 | Andrey Golovin | h2. Приамбула |
7 | 1 | Andrey Golovin | |
8 | 1 | Andrey Golovin | В большинстве случаев я использую некий шаблон постоянного содержания откуда указывается путь к файлу с содержимым. Если надо задать некоторые функции я их выношу в отдельный файл, как впрочем настройки стилей, так и пакеты для использования. |
9 | 1 | Andrey Golovin | |
10 | 2 | Andrey Golovin | * Основной файл: attachment:prez.tex |
11 | 2 | Andrey Golovin | * Функции: attachment:functions.tex |
12 | 2 | Andrey Golovin | * Подключаемые пакеты: attachment:packages.tex |
13 | 2 | Andrey Golovin | * Настроки стилей: attachment:header.sty |
14 | 2 | Andrey Golovin | * Пример файла с содержимым: attachment:cont.tex |
15 | 4 | Andrey Golovin | * Все растровые картинки располагаются в директории *./fig* |
16 | 4 | Andrey Golovin | * Файлы для графиков располагаются в директории *./plot* |
17 | 3 | Andrey Golovin | |
18 | 3 | Andrey Golovin | Для сборки всего в один pdf файл используется: |
19 | 1 | Andrey Golovin | <code> |
20 | 4 | Andrey Golovin | lualatex --shell-escape prez.tex |
21 | 1 | Andrey Golovin | </code> |
22 | 4 | Andrey Golovin | |
23 | 4 | Andrey Golovin | h2. Примеры |
24 | 4 | Andrey Golovin | |
25 | 5 | Andrey Golovin | h3. Химические формулы (chemfig): |
26 | 5 | Andrey Golovin | |
27 | 5 | Andrey Golovin | Номера атомов располагались с помощью невидимых связей |
28 | 5 | Andrey Golovin | |
29 | 5 | Andrey Golovin | |_.Код |_. Результат | |
30 | 5 | Andrey Golovin | |<pre><code> |
31 | 5 | Andrey Golovin | \begin{frame}{Основания} |
32 | 5 | Andrey Golovin | \setatomsep{1.6em}% |
33 | 5 | Andrey Golovin | \footnotesize \begin{tabular}{c c c c} |
34 | 5 | Andrey Golovin | \chemfig{*6((-[5,0.5,,,draw=none]\color{blue}2)=N(-[6,0.5,,,draw=none]\color{blue}3)-(-[6,0.5,,,draw=none]\color{blue}4)*6( |
35 | 5 | Andrey Golovin | -\chembelow{N}{H}(-[6,1.0,,,draw=none]\color{blue}9)-(-[7,0.5,,,draw=none]\color{blue}8)=N?(-[1,0.5,,,draw=none]\color{blue}7)) |
36 | 5 | Andrey Golovin | =?(-[2,0.5,,,draw=none]\color{blue}5)-(-[2,0.5,,,draw=none]\color{blue}6)=N(-[3,0.5,,,draw=none]\color{blue}1)-[,,1])} & |
37 | 5 | Andrey Golovin | |
38 | 5 | Andrey Golovin | \chemfig{*6((-[:-130]H_2N)=N-*6(-\chembelow{N}{H}-=N?)=?-(=[2]O)-HN-[,,2])}& |
39 | 5 | Andrey Golovin | \chemfig{*6(=N-*6(-\chembelow{N}{H}-=N?)=?-(-[2]NH_2)=N-[,,1])}&~\\[1.0cm]-HN-[,,2])}& |
40 | 5 | Andrey Golovin | \chemfig{*6(=N-*6(-\chembelow{N}{H}-=N?)=?-(-[2]NH_2)=N-[,,1])}&~\\[1.0cm] |
41 | 5 | Andrey Golovin | Пурин&Гуанин&Аденин& \\[.2cm] |
42 | 5 | Andrey Golovin | \hline\\[.2cm] |
43 | 5 | Andrey Golovin | \chemfig{*6((-[5,0.5,,,draw=none]\color{blue}2)=N(-[6,0.5,,,draw=none]\color{blue}1)-(-[7,0.5,,,draw=none]\color{blue}6) |
44 | 5 | Andrey Golovin | =(-[1,0.5,,,draw=none]\color{blue}5)-(-[2,0.5,,,draw=none]\color{blue}4)=N(-[3,0.6,,,draw=none]\color{blue}3)-)} & |
45 | 5 | Andrey Golovin | \chemfig{*6((=[5]O)-\chembelow{N}{H}-=-(-[2]NH_2)=N-)} & |
46 | 5 | Andrey Golovin | \chemfig{*6((=[5]O)-\chembelow{N}{H}-=-(=[2]O)-HN-[,,2])} & |
47 | 5 | Andrey Golovin | \chemfig{*6((=[5]O)-\chembelow{N}{H}-=(-[1])-(=[2]O)-HN-[,,2])} |
48 | 5 | Andrey Golovin | \\[1.0cm] |
49 | 5 | Andrey Golovin | Пиримидин&Цитозин&Урацил&Тимин\\[.2cm] |
50 | 5 | Andrey Golovin | \hline |
51 | 5 | Andrey Golovin | |
52 | 5 | Andrey Golovin | \end{tabular} |
53 | 5 | Andrey Golovin | \end{center} |
54 | 5 | Andrey Golovin | \end{frame}</code></pre>| !nucl-5.png! | |
55 | 5 | Andrey Golovin | |
56 | 5 | Andrey Golovin | Стерео связи и подписи: |
57 | 5 | Andrey Golovin | |
58 | 5 | Andrey Golovin | |_.Код |_. Результат | |
59 | 5 | Andrey Golovin | |<pre><code> |
60 | 5 | Andrey Golovin | \begin{frame}{Основания и остов} |
61 | 5 | Andrey Golovin | \begin{center} |
62 | 5 | Andrey Golovin | \begin{tikzpicture}[help lines/.style={thin,draw=black!50}] |
63 | 5 | Andrey Golovin | \node (2) at (6,5) {N-гликозидная связь}; |
64 | 5 | Andrey Golovin | \node (1) at (2,2) {% |
65 | 5 | Andrey Golovin | \schemestart[][west] |
66 | 5 | Andrey Golovin | \setatomsep{1.7em}\setcrambond{0.2em}{}{}% |
67 | 5 | Andrey Golovin | \small\chemfig{-[0]O-[0]-[6]?<[7](-[,,,,line |
68 | 5 | Andrey Golovin | width=0.2em]>[1](-[2]OH)-[:160,1.3]O?)-[6]O |
69 | 5 | Andrey Golovin | -[6]P(=[:-90]O)(-[4]\chemabove{O}{\hspace{1em}-}) |
70 | 5 | Andrey Golovin | -[0]O-[0]-[6]?[c2]<[7](-[,,,,line |
71 | 5 | Andrey Golovin | width=0.2em]>[1](-[2]OH)-[:160,1.3]O?[c2])-[6]O-[6] |
72 | 5 | Andrey Golovin | } |
73 | 5 | Andrey Golovin | \arrow{-U>[ 2B ]}[0] |
74 | 5 | Andrey Golovin | \setatomsep{1.7em}\setcrambond{0.2em}{}{}% |
75 | 5 | Andrey Golovin | \small\chemfig{-[0]O-[0]-[6]?<[7](-[,,,,line |
76 | 5 | Andrey Golovin | width=0.2em]>[1](-[2]B)-[:160,1.3]O?)-[6]O |
77 | 5 | Andrey Golovin | -[6]P(=[:-90]O)(-[4]\chemabove{O}{\hspace{1em}-}) |
78 | 5 | Andrey Golovin | -[0]O-[0]-[6]?[c2]<[7](-[,,,,line |
79 | 5 | Andrey Golovin | width=0.2em]>[1](-[2]B)-[:160,1.3]O?[c2])-[6]O-[6] |
80 | 5 | Andrey Golovin | } |
81 | 5 | Andrey Golovin | \schemestop}; |
82 | 5 | Andrey Golovin | \draw [orange,thick](2.south east) -- (2.south); |
83 | 5 | Andrey Golovin | \draw [->,orange,thick] (2.south east) -- (6,3.8); |
84 | 5 | Andrey Golovin | \end{tikzpicture} |
85 | 5 | Andrey Golovin | \end{center} |
86 | 5 | Andrey Golovin | \end{frame} |
87 | 5 | Andrey Golovin | </code></pre>| !nucl-6.png! | |
88 | 5 | Andrey Golovin | |
89 | 5 | Andrey Golovin | |
90 | 5 | Andrey Golovin | h3. Формулы и объеткы tikz: |
91 | 5 | Andrey Golovin | |
92 | 5 | Andrey Golovin | |_.Код |_. Результат | |
93 | 5 | Andrey Golovin | |<pre><code> |
94 | 5 | Andrey Golovin | {Молекулярная динамика} |
95 | 5 | Andrey Golovin | \begin{center} |
96 | 5 | Andrey Golovin | \tiny |
97 | 5 | Andrey Golovin | $$ U=\sum_{bonds}{ \frac{k_i}{2} ( l_i - l_0)^2} + \sum_{angles}{ \frac{k_i}{2} ( \phi_i - \phi_0)^2} + \sum_{torsions} { \frac{V_n}{2} (1 + cos(n\omega - \gamma))} + $$ |
98 | 5 | Andrey Golovin | $$ + \sum_{i=1}^N \sum_{j=i+1}^N \left ( 4 \epsilon_{ij} \left [ \left ( \frac{\sigma_{ij}}{r_{ij}} \right )^{12} - \left ( \frac{\sigma_{ij}}{r_{ij}} \right )^6 \right ] + |
99 | 5 | Andrey Golovin | \frac{q_i q_j}{ 4\pi \epsilon_0 r_{ij}} \right ) $$ |
100 | 5 | Andrey Golovin | \rule[0.5cm]{\linewidth}{1pt} |
101 | 5 | Andrey Golovin | \begin{tikzpicture}[node distance=1cm, auto] |
102 | 5 | Andrey Golovin | \tikzset{% |
103 | 5 | Andrey Golovin | mynode/.style={rectangle,draw=brown, top color=blue!10,bottom color=blue!10 }, |
104 | 5 | Andrey Golovin | myarrow/.style={->, >=latex', shorten >=1pt, thick}, |
105 | 5 | Andrey Golovin | mylabel/.style={text width=7em, text centered} |
106 | 5 | Andrey Golovin | } |
107 | 5 | Andrey Golovin | \node (nGray) [mynode] at (0, 2.5) |
108 | 5 | Andrey Golovin | {% |
109 | 5 | Andrey Golovin | \begin{minipage}{0.4\textwidth} |
110 | 5 | Andrey Golovin | \footnotesize Расчёт силы, действующей на атом |
111 | 5 | Andrey Golovin | \begin{center} |
112 | 5 | Andrey Golovin | \normalsize |
113 | 5 | Andrey Golovin | $ F_i= \sum_j F_{ij} $ |
114 | 5 | Andrey Golovin | \end{center} |
115 | 5 | Andrey Golovin | \end{minipage} |
116 | 5 | Andrey Golovin | }; |
117 | 5 | Andrey Golovin | \node (nRed) [mynode] at (3, 0) |
118 | 5 | Andrey Golovin | {% |
119 | 5 | Andrey Golovin | \begin{minipage}{0.4\textwidth} |
120 | 5 | Andrey Golovin | \footnotesize Расчёт новых координат |
121 | 5 | Andrey Golovin | \normalsize |
122 | 5 | Andrey Golovin | \begin{center} |
123 | 5 | Andrey Golovin | $ \frac{\partial^2r_i}{\partial t^2}=\frac{F_i}{m_i} $ \\ |
124 | 5 | Andrey Golovin | $ \frac{\partial r_i}{\partial t} =v_i , \frac{\partial |
125 | 5 | Andrey Golovin | v_i}{\partial t} = \frac{F_i}{m_i} $ |
126 | 5 | Andrey Golovin | \end{center} |
127 | 5 | Andrey Golovin | \end{minipage} |
128 | 5 | Andrey Golovin | }; |
129 | 5 | Andrey Golovin | \node[mylabel, below of=nGray] (label1) at (-1,2) {% |
130 | 5 | Andrey Golovin | \begin{minipage}{0.1\textwidth} |
131 | 5 | Andrey Golovin | \[ \Delta t \] |
132 | 5 | Andrey Golovin | \end{minipage} |
133 | 5 | Andrey Golovin | }; |
134 | 5 | Andrey Golovin | \draw [ color = red, ultra thick, -> ](nGray) |- (nRed); |
135 | 5 | Andrey Golovin | \draw [ color = brown, ultra thick, -> ](nRed) |- (nGray); |
136 | 5 | Andrey Golovin | \end{tikzpicture} |
137 | 5 | Andrey Golovin | \end{center} |
138 | 5 | Andrey Golovin | \end{frame}% |
139 | 5 | Andrey Golovin | </code></pre>| !nucl-11.png! | |
140 | 5 | Andrey Golovin | |
141 | 5 | Andrey Golovin | |
142 | 5 | Andrey Golovin | |
143 | 5 | Andrey Golovin | h3. Изображение и объеткы tikz: |
144 | 5 | Andrey Golovin | |
145 | 5 | Andrey Golovin | |_.Код |_. Результат | |
146 | 5 | Andrey Golovin | |<pre><code> |
147 | 5 | Andrey Golovin | \begin{frame}% |
148 | 5 | Andrey Golovin | {Система для моделирования} |
149 | 5 | Andrey Golovin | \begin{tikzpicture}[xscale=1.0,yscale=1.0] |
150 | 5 | Andrey Golovin | \node (ri) at (3,2 ) {\includegraphics[width=0.45\textwidth]{ribo.png}}; |
151 | 5 | Andrey Golovin | \node (cu) at (9,2) {\includegraphics[width=0.45\textwidth]{ribocube.png}}; |
152 | 5 | Andrey Golovin | \draw[thick,opacity=0.7] (2,1) rectangle (4,3); |
153 | 5 | Andrey Golovin | \draw[thick] (cu.south west) rectangle (cu.north east); |
154 | 5 | Andrey Golovin | \draw[dashed] (4,3) -- (cu.north west); |
155 | 5 | Andrey Golovin | \draw[dashed] (4,1) -- (cu.south west); |
156 | 5 | Andrey Golovin | \begin{scope}[fill opacity=.5,transparency group] |
157 | 5 | Andrey Golovin | \node[thick,draw=black, fill=orange,opacity=0.5,circle,minimum size=1cm, radius=1.5] |
158 | 5 | Andrey Golovin | at (cu.center) {~} ; |
159 | 5 | Andrey Golovin | \end{scope} |
160 | 5 | Andrey Golovin | \node at (cu.center){Lig}; |
161 | 5 | Andrey Golovin | \end{tikzpicture} |
162 | 5 | Andrey Golovin | \end{frame}% |
163 | 5 | Andrey Golovin | </code></pre>| !nucl-12.png! | |
164 | 5 | Andrey Golovin | |
165 | 5 | Andrey Golovin | |
166 | 4 | Andrey Golovin | h3. График функции и не только: |
167 | 5 | Andrey Golovin | |
168 | 4 | Andrey Golovin | |_.Код |_. Результат | |
169 | 5 | Andrey Golovin | |<pre><code> |
170 | 4 | Andrey Golovin | \begin{frame}% |
171 | 4 | Andrey Golovin | {Конформационное равновесие} |
172 | 4 | Andrey Golovin | \begin{center} |
173 | 4 | Andrey Golovin | \schemestart |
174 | 4 | Andrey Golovin | \setnodestyle{draw,rectangle,fill=red,minimum size=20pt} |
175 | 4 | Andrey Golovin | \chemfig{P_2} |
176 | 4 | Andrey Golovin | \arrow{<->>} |
177 | 4 | Andrey Golovin | \setnodestyle{draw,circle,fill=yellow,minimum size=20pt} |
178 | 4 | Andrey Golovin | \chemfig{P_1} |
179 | 4 | Andrey Golovin | \schemestop |
180 | 4 | Andrey Golovin | \hspace{3cm}~\par |
181 | 4 | Andrey Golovin | \vspace{.75cm} |
182 | 4 | Andrey Golovin | \begin{tikzpicture}[xscale=1.0,yscale=1.0] |
183 | 4 | Andrey Golovin | %% Pot energy plot |
184 | 4 | Andrey Golovin | \begin{axis}[height=7cm,width=15cm, |
185 | 4 | Andrey Golovin | xmin=-300,xmax=400,ymin=-.2, hide x axis, hide y axis, |
186 | 4 | Andrey Golovin | xlabel=$$, ylabel=$$] |
187 | 4 | Andrey Golovin | \addplot+[raw gnuplot, draw=blue, mark=none, smooth,thick] gnuplot[id=m]{% |
188 | 4 | Andrey Golovin | set xrange [-180:180]; plot 1-0.25*(1+cos(3*pi*x/180))- 0.25*(1+cos(2*pi*x/180)) }; |
189 | 4 | Andrey Golovin | \draw[dashed,thick,red,->] (axis cs:-150,.7) parabola bend (axis cs:-70,0.95)(axis cs:0,.7); |
190 | 4 | Andrey Golovin | \addplot[->,thick] coordinates {(-180,0.33) (-150,0.33)}; |
191 | 4 | Andrey Golovin | \addplot[->,thick] coordinates {(-180,0.90) (-80,.90)}; |
192 | 4 | Andrey Golovin | \addplot[thick] coordinates {(-180,0.90) (-180,.70)}; |
193 | 4 | Andrey Golovin | \addplot[thick] coordinates {(-180,0.33) (-180,.52)}; |
194 | 4 | Andrey Golovin | \addplot[->,thick] coordinates {(90,0.33) (-120,0.33)}; |
195 | 4 | Andrey Golovin | \addplot[->,thick] coordinates {(90,0.00) (5,.00)}; |
196 | 4 | Andrey Golovin | \addplot[thick] coordinates {(90,0.33) (90,0.22)}; |
197 | 4 | Andrey Golovin | \addplot[thick] coordinates {(90,0) (90,.05)}; |
198 | 4 | Andrey Golovin | \node at (axis cs:-180,0.6) {$\Delta E_a$}; |
199 | 4 | Andrey Golovin | \node at (axis cs:90,0.16) {$\Delta G$}; |
200 | 4 | Andrey Golovin | \node at (axis cs:-140,0.25) {$P_2$}; |
201 | 4 | Andrey Golovin | \node at (axis cs:0,-0.1) {$P_1$}; |
202 | 4 | Andrey Golovin | \node at (axis cs:200,0.1){% |
203 | 4 | Andrey Golovin | \Large{$\frac{[P_1]}{[P_2]}\sim e^{-\frac{\Delta G}{RT}} |
204 | 4 | Andrey Golovin | $} |
205 | 4 | Andrey Golovin | } ; |
206 | 4 | Andrey Golovin | \node at (axis cs:200,-0.1){% |
207 | 4 | Andrey Golovin | $\frac{1}{100}\sim $ \textit{5 кКал}} ; |
208 | 4 | Andrey Golovin | \node at (axis cs:-180,0){% |
209 | 4 | Andrey Golovin | \Large{$ k_v \sim e^{-\frac{\Delta E_a}{RT}}$} |
210 | 4 | Andrey Golovin | }; |
211 | 1 | Andrey Golovin | \end{axis} |
212 | 4 | Andrey Golovin | \end{tikzpicture} |
213 | 4 | Andrey Golovin | \end{center} |
214 | 4 | Andrey Golovin | \end{frame}% |
215 | 5 | Andrey Golovin | </code></pre>| !prez-2.png! | |